Partial List of Publications#

• citations-to-date from google scholar
  

Hausser J, Syed AP, Selevsek N, van Nimwegen E, Jaskiewicz L, Aebersold R, Zavolan M. Timescales

and bottlenecks in miRNA-dependent gene regulation. Mol Syst Biol. 9:711 (2013).



Khorshid M, Hausser J, van Nimwegen E, Zavolan M. A biophysical miRNA-mRNA interaction

model infers canonical and non-canonical targets. Nat. Methods Jan 20 (2013).

(14*)



Martin G, Gruber AR, Keller W, Zavolan M. Genome-wide analysis of pre-mRNA 3’ end processing

reveals a decisive role of human cleavage factor I in the regulation of 3’ UTR length. Cell Rep.

1:753-763 (2012).

(35*)



Kishore S, Jaskiewicz L, Burger L, Hausser J, Khorshid M, Zavolan M. A quantitative analysis of

CLIP methods for identifying binding sites of RNA-binding proteins. Nat. Methods 8:559-564 (2011).

(108*)



Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr,

Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Transcriptomewide

identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141:129-141

(2010).

(662*)



Hausser J, Landthaler M, Jaskiewicz L, Gaidatzis D, Zavolan M. Relative contribution of sequence and

structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation

of miRNA targets. Genome Res. 19:2009-2020 (2009).

(57*)



Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO,

Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foà R, Schliwka J, Fuchs U,

Novosel A, Müller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De

Vita G, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di Lauro R,

Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W,

Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T. A mammalian

microRNA expression atlas based on small RNA library sequencing. Cell 129:1401-1414 (2007).

(1831*)



Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M. Inference of miRNA targets using evolutionary

conservation and pathway analysis. BMC Bioinformatics 8:69 (2007).

(195*)



Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grässer FA, van Dyk LF, Chien M,

Russo JJ, Ju J, Randall G, Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T.

Identification of the microRNAs of the herpesvirus family. Nat. Methods 2:269-276 (2005).

(848*)