Michiel Vermeulen - Selected Publications#

Researcher ID: C-8883-2013, Google scholar: https://scholar.google.de/citations?user=XBmxl-QAAAAJ&hl=en
Records in Pubmed: 105
Web of Science H: index 34, Google Scholar 41
Number of citations: 5276, Google Scholar 8063

1) Furlan C, Dirks R, Thomas P, Jones R, Wang J, Lynch M, Marks H, Vermeulen M. Miniaturised interaction proteomics on a microfluidics platform with ultra-low input requirements. Nat Commun. 2019 in press.

2) Kloet SL, Karemaker ID, van Voorthuijsen L, Lindeboom RG, Baltissen MP, Edupuganti RR, Poramba-Liyanage DW, Jansen PWTC, Vermeulen M. NuRD-interacting protein ZFP296 regulates genome-wide NuRD localization and differentiation of mouse embryonic stem cells. Nat Commun. 2018 Nov 2;9(1):4588

3) Makowski MM, Graewe C, Foster BM, Nguyen NV, Bartke T, Vermeulen M. Global profiling of protein-DNA and protein-nucleosome binding affinities using quantitative mass spectrometry. Nat Commun. 2018 Apr 25;9(1):1653.

4) Edupuganti RR, Geiger S, Lindeboom RGH, Shi H, Hsu PJ, Lu Z, Wang SY, Baltissen MPA, Jansen PWTC, Rossa M, Müller M, Stunnenberg HG, He C, Carell T, Vermeulen M. N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis. Nat Struct Mol Biol. 2017 Oct;24(10):870-878.

5) Zhang X, Smits AH, van Tilburg GBA, Jansen PWTC, Makowski MM, Ovaa H, Vermeulen M. An interaction landscape of ubiquitin signaling. Mol Cell 2017 Mar 2;65(5):941-955.e8.

6) Spruijt CG, Luijsterburg MS, Menafra R, Lindeboom RG, Jansen PW, Edupuganti RR, Baltissen MP, Wiegant WW, Voelker-Albert MC, Matarese F, Mensinga A, Poser I, Vos HR, Stunnenberg HG, van Attikum H, Vermeulen M. ZMYND8 co-localizes with NuRD on target genes and regulates Poly(ADP-Ribose)-dependent recruitment of GATAD2A/NuRD to sites of DNA damage. Cell Rep. 2016 Oct 11;17(3):783-798.

7) Kloet SL, Makowski MM, Baymaz HI, van Voorthuijsen L, Karemaker ID, Sanatanach A, Jansen PW, Di Croce L, Vermeulen M. The dynamic interactome and genomic targets of Polycomb complexes during stem-cell differentiation. Nat Struct Mol Biol. 2016 Jul;23(7):682-90.

8) Spruijt CG, Gnerlich F, Smits AH, Pfaffeneder T, Jansen PWTC, Bauer C, Münzel M, Wagner M, Müller M, Khan F, Eberl HC, Mensinga A, Brinkman AB, Lephikov K, Müller U, Walter J, Boelens R, Van Ingen H, Leonhardt H, Carell T, Vermeulen M. Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives. Cell. 2013. Feb 28;152(5):1146-59.

9) Vermeulen M, Eberl C, Matarese F, Marks H, Denissov S, Butter F, Lee K, Olsen J, Hyman A, Stunnenberg H, Mann M. Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell. 2010 Sep 17;142(6):967-80.

10) Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, Warrier RA, Baltissen MP, Stunnenberg HG, Mann M, Timmers HT. Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell. 2007 Oct 5;131(1):58-69.