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Alexey Bogdanov - Recent publications#


  • Burakovsky D.E., Prokhorova I.V., Sergiev P.V., Milon P., Sergeeva O.V., Bogdanov A.A., Rodnina M.V., Dontsova O.A. (2012) Impact of methylations of m(2)G966/m(5)C967 in 16S rRNA on bacterial fitness and translation initiation. Nucleic Acids Res., 40 (16): 7885-7895. >>
  • Golovina A.Y., Dzama M.M., Osterman I.A., Sergiev P.V., Serebryakova M.V., Bogdanov A.A., Dontsova O.A. (2012) The last rRNA methyltransferase of E. coli revealed: The yhiR gene encodes adenine-N6 methyltransferase specific for modification of A2030 of 23S ribosomal RNA. RNA-Publ. RNA Soc., 18 (9): 1725-1734. >>
  • Sergiev P.V., Golovina A.Y., Sergeeva O.V., Osterman I.A., Nesterchuk M.V., Bogdanov A.A., Dontsova O.A. (2012) How much can we learn about the function of bacterial rRNA modification by mining large-scale experimental datasets?. Nucleic Acids Res., 40 (12): 5694-5705. >>
  • Sergeeva O.V., Prokhorova I.V., Ordabaev Y., Tsvetkov P.O., Sergiev P.V., Bogdanov A.A., Makarov A.A., Dontsova O.A. (2012) Properties of small rRNA methyltransferase RsmD: Mutational and kinetic study. RNA-Publ. RNA Soc., 18 (6): 1178-1185. >>
  • Sergiev P.V., Lesnyak D.V., Burakovsky D.E., Svetlov M., Kolb V.A., Serebryakova M.V., Demina I.A., Govorun V.M., Dontsova O.A., Bogdanov A.A. (2012) Non-Stressful Death of 23S rRNA Mutant G2061C Defective in Puromycin Reaction. J. Mol. Biol., 416 (5): 656-667. >>
  • Burakovsky D.E., Sergiev P.V., Steblyanko M.A., Konevega A.L., Bogdanov A.A., Dontsova O.A. (2011) The structure of helix 89 of 23S rRNA is important for peptidyl transferase function of Escherichia coli ribosome. FEBS Letters, 585 (19): 3073-3078.
  • Bogdanov A.A., Zinovkin R.A., Zamyatnin A.A. (2011) RNA Editing: Breaking the Dogma. Biochemistry-Moscow, 76 (8): 867-868.
  • Sergiev P.V., Prokhorova I.V., Burakovsky D.E., Milon P., Serebryakova M.V., Demina I.A., Galyamova M.A., Govorun V.M., Bogdanov A.A., Rodnina M.V., Dontsova O.A. (2011) Functional role of ribosomal RNA methylation. FEBS Journal, 278: 10.
  • Osterman I.A., Sergiev P.V., Tsvetkov P.O., Makarov A.A., Bogdanov A.A., Dontsova O.A. (2011) Methylated 23S rRNA nucleotide m(2)G1835 of Escherichia coli ribosome facilitates subunit association. Biochimie, 93 (4): 725-729.
  • Osterman I.A., Sergiev P.V., Tsvetkov P.O., Makarov A.A., Bogdanov A.A., Dontsova O.A. (2011) Methylated 23S rRNA nucleotide m(2)G1835 of Escherichia coli ribosome facilitates subunit association. Biochimie, 93: 725-729. >>
  • Bogdanov A.A., Sumbatyan N.V., Shishkina A.V., Karpenko V.V., Korshunova G.A. (2010) Ribosomal tunnel and translation regulation. Biochemistry-Moscow, 75 (13): 1501-1516.
  • Burakovsky D.E., Sergiev P.V., Steblyanko M.A., Kubarenko A.V., Konevega A.L., Bogdanov A.A., Rodnina M.V., Dontsova O.A. (2010) Mutations at the accommodation gate of the ribosome impair RF2-dependent translation termination. RNA-Publ. RNA Soc., 16 (9): 1848-1853.
  • Golovina A.Y., Bogdanov A.A., Dontsova O.A., Sergiev P.V. (2010) Purification of 30S ribosomal subunit by streptavidin affinity chromatography. Biochimie, 92 (7): 914-917.
  • Starosta A.L., Karpenko V.V., Shishkina A.V., Mikolajka A., Sumbatyan N.V., Schluenzen F., Korshunova G.A., Bogdanov A.A., Wilson D.N. (2010) Interplay between the Ribosomal Tunnel, Nascent Chain, and Macrolides Influences Drug Inhibition. Biology, 17 (5): 504-514.
  • Sumbatyan N.V., Kuznetsova I.V., Karpenko V.V., Fedorova N.V., Chertkov V.A., Korshunova G.A., Bogdanov A.A. (2010) Amino acid and peptide derivatives of the tylosin family of macrolide antibiotics modified by aldehyde function. Russian Journal of Bioorganic Chemistry, 36 (2): 245-256.
  • Bugaeva E.Y., Surkov S., Golovin A.V., Ofverstedt L.G., Skoglund U., Isaksson L.A., Bogdanov A.A., Shpanchenko O.V., Dontsova O.A. (2009) Structural features of the tmRNA-ribosome interaction. RNA-Publ. RNA Soc., 15 (12): 2312-2320.
  • Sergiev P.V., Serebryakova M.V., Bogdanov A.A., Dontsova O.A. (2008) The ybiN gene of E. coli encodes adenine-N6 methyltransferase specific for modification of A1618 of 23S ribosomal RNA, a methylated residue located close to the ribosomal exit tunnel. J. Mol. Biol., 375: 291-300. >>
  • Sergiev P.V., Bogdanov A.A., Dontsova O.A. (2007) Ribosomal RNA guanine-(N2)-methyltransferases and their targets. Nucleic Acids Research, 35 (7): 2295-2301.
  • Korshunova G.A., Sumbatyan N.V., Fedorova N.V., Kumetsova I.V., Shishkina A.V., Bogdanov A.A. (2007) Peptide derivatives of tylosin-related macrolides. Russian Journal of Bioorganic Chemistry, 33 (2): 218-226.
  • Lesnyak D.V., Osipiuk J., Skarina T., Sergiev P.V., Bogdanov A.A., Edwards A., Savchenko A., Joachimiak A., Dontsova O.A. (2007) Methyltransferase that modifies guanine 966 of the 16 S rRNA - Functional identification and tertiary structure. Journal of Biological Chemistry, 282 (8): 5880-5887.
  • Lesnyak D.V., Sergiev P.V., Bogdanov A.A., Dontsova O.A. (2006) Identification of Escherichia coli m(2) G methyltransferases: I. The ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA. Journal of Molecular Biology, 364 (1): 20-25.
  • Sergiev P.V., Lesnyak D.V., Bogdanov A.A., Dontsova O.A. (2006) Identification of Escherichia coli m(2) G methyltransferases: II. The ygjO gene encodes a methyltransferase specific for G1835 of the 23 S rRNA. Journal of Molecular Biology, 364 (1): 26-31.
  • Kiparisov S.V., Sergiev P.V., Bogdanov A.A., Dontsova O.A. (2006) Structural changes in the ribosome during the elongation cycle. Molecular Biology, 40 (5): 675-687.
  • Sergiev P.V., Bogdanov A.A., Dontsova O.A. (2005) How can elongation factors EF-G and EF-Tu discriminate the functional state of the ribosome using the same binding site?. FEBS Letters, 579 (25): 5439-5442.
  • Sergiev P.V., Kiparisov S.V., Burakovsky D.E., Lesnyak D.V., Leonov A.A., Bogdanov A.A., Dontsova O.A. (2005) The conserved A-site finger of the 23 S rRNA: Just one of the intersubunit bridges or a part of the allosteric communication pathway?. Journal of Molecular Biology, 353 (1): 116-123.
  • Sergiev P.V., Lesnyak D.V., Burakovsky D.E., Kiparisov S.V., Leonov A.A., Bogdanov A.A., Brimacombe R., Dontsova O.A. (2005) Alteration in location of a conserved GTPase-associated center of the ribosome induced by mutagenesis influences the structure of peptidyltransferase center and activity of elongation factor G. Journal of Biological Chemistry, 280 (36): 31882-31889.
  • Bogdanov A.A. (2005) AN Belozersky and his Institute. Molecular Biology, 39 (4): 545-547.
  • Sergiev P.V., Lesnyak D.V., Kiparisov S.V., Burakovsky D.E., Leonov A.A., Bogdanov A.A., Brimacombe R., Dontsova O.A. (2005) Function of the ribosomal E-site: a mutagenesis study. Nucleic Acids Research, 33 (18): 6048-6056.
  • Sumbatyan N.V., Korshunova G.A., Bogdanov A.A. (2003) Peptide derivatives of antibiotics tylosin and desmycosin, protein synthesis inhibitors. Biochemistry-Moscow, 68 (10): 1156-1158.
  • Evstafieva A.G., Belov G.A., Rubtsov Y.P., Kalkum M., Joseph B., Chichkova N.V., Sukhacheva E.A., Bogdanov A.A., Pettersson R.F., Agol V.I., Vartapetian A.B. (2003) Apoptosis-related fragmentation, translocation, and properties of human prothymosin alpha. Experimental Cell Research, 284 (2): 211-223.
  • Bogdanov A.A. (2000) The scientific school of M.A. Prokofiev and Z.A. Shabarova. Molecular Biology, 34 (6): 777-780.
  • Evstafieva A.G., Belov G.A., Kalkum M., Chichkova N.V., Bogdanov A.A., Agol V.I., Vartapetian A.B. (2000) Prothymosin alpha fragmentation in apoptosis. FEBS Letters, 467 (2): 150-154.
  • Sergiev P.V., Lavrik I.N., Dokudovskaya S.S., Dontsova O.A., Bogdanov A.A. (1998) Structure of the decoding center of the ribosome. Biochemistry-Moscow, 63 (8): 963-976.
  • Baranov P.V., Gurvich O.L., Bogdanov A.A., Brimacombe R., Dontsova O.A. (1998) New features of 23S ribosomal RNA folding: The long helix 41-42 makes a "U-turn" inside the ribosome. RNA-Publ. RNA Soc., 4 (6): 658-668.
  • Baranov P.V., Sergiev P.V., Dontsova O.A., Bogdanov A.A., Brimacombe R. (1998) The Database of Ribosomal Cross Links (DRC). Nucleic Acids Research, 26 (1): 187-189.
  • Baranov P.V., Dokudovskaya S.S., Oretskaya T.S., Dontsova O.A., Bogdanov A.A., Brimacombe R. (1997) A new technique for the characterization of long-range tertiary contacts in large RNA molecules: Insertion of a photolabel at a selected position in 16S rRNA within the Escherichia coli ribosome. Nucleic Acids Research, 25 (12): 2266-2273.
  • Bogdanov A.A., Lavrik I.N., Dokudovskaya S.S., Dontsova O.A. (1995) Structure and function of 5S rRNA in the ribosome. Molecular Biology, 29 (6): 721-727.
  • Evstafieva A.G., Chichkova N.V., Makarova T.N., Vartapetian A.B., Vasilenko A., Abramov V.M., Bogdanov A.A. (1995) Overproduction in Escherichia-Coli, Purification and Properties of Human Prothymosin-Alpha. European Journal of Biochemistry, 231 (3): 639-643.
  • Evstafieva A.G., Beletsky A.V., Borovjagin A.V., Bogdanov A.A. (1993) Internal Ribosome Entry Site of Encephalomyocarditis Virus-RNA Is Unable to Direct Translation in Saccharomyces-Cerevisiae. FEBS Letters, 335 (2): 273-276.
  • Bogdanov A.A. (1992) Fresco-Alberts-Doty Model. Trends in Biochemical Sciences, 17 (5): 177.
  • Balakin A.G., Skripkin E.A., Shatsky I.N., Bogdanov A.A. (1992) Unusual Ribosome Binding-Properties of Messenger-RNA Encoding Bacteriophage-Lambda Repressor. Nucleic Acids Research, 20 (3): 563-571.
  • Bakin A.V., Borisova O.F., Shatsky I.N., Bogdanov A.A. (1991) Spatial-Organization of Template Polynucleotides on the Ribosome Determined by Fluorescence Methods. Journal of Molecular Biology, 221 (2): 441-453.
  • Shabarova Z.A., Merenkova I.N., Oretskaya T.S., Sokolova N.I., Skripkin E.A., Alexeyeva E.V., Balakin A.G., Bogdanov A.A. (1991) Chemical Ligation of DNA - the 1St Nonenzymatic Assembly of A Biologically-Active Gene. Nucleic Acids Research, 19 (15): 4247-4251.
  • Shabarova Z.A., Merenkova I.N., Oretskaya T.S., Sokolova N.I., Skripkin E.A., Alexeyeva E.V., Balakin A.G., Bogdanov A.A. (1991) Chemical Ligation of DNA - the 1St Nonenzymatic Assembly of A Biologically-Active Gene. Nucleic Acids Research, 19 (15): 4247-4251.
  • Shatsky I.N., Bakin A.V., Bogdanov A.A., Vasiliev V.D. (1991) How Does the Messenger-RNA Pass Through the Ribosome. Biochimie, 73 (7): 937-945.
  • Afonina E.I., Chichkova N.V., Bogdanov A.A. (1991) RNA Rna and Rna Protein Interactions in 30-S Ribosomal-Subunits - Association of 16-S Ribosomal-Rna Fragments in the Presence of Ribosomal-Proteins. FEBS Letters, 283 (2): 251-254.
  • Afonina E.I., Chichkova N.V., Bogdanov A.A. (1991) RNA Rna and Rna Protein Interactions in 30-S Ribosomal-Subunits - Association of 16-S Ribosomal-Rna Fragments in the Presence of Ribosomal-Proteins. FEBS Letters, 283 (2): 251-254.
  • Bogdanov A.A., Gordeeva L.V., Baibakov B.A., Margolis L.B., Torchilin V.P. (1991) Restoration of Adhesive Potentials of Ehrlich Ascites-Carcinoma Cells by Modification of Plasma-Membrane. Journal of Cellular Physiology, 147 (1): 182-190.
  • Gordeeva L.V., Bogdanov A.A., Baibakov B.A., Torchilin V.P., Margolis L.B. (1988) Adhesion Defect of Ascites-Cells Corrected with Membrane-Bound Attachment Molecules. FEBS Letters, 241 (1): 185-187.
  • Drygin Y.F., Zuklys K.L., Terskich A.V., Bogdanov A.A. (1988) A Protein Covalently Bound to Cole1 DNA. European Journal of Biochemistry, 175 (1): 57-63.
  • Bogdanov A.A., Chichkova N.V., Kopylov A.M., Mankin A.S., Skripkin E.A. (1988) Surface-Topography of Ribosomal-RNA. Methods in Enzymology, 164: 440-456.
  • Kagramanova V.K., Mankin A.S., Baratova L.A., Bogdanov A.A. (1982) The 3=-Terminal Nucleotide-Sequence of the Halobacterium-Halobium 16 S Ribosomal-RNA. FEBS Letters, 144 (1): 177-180.


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