Malika Ainouche - Selected Publications#

Giraud D., Lima O., Rousseau-Gueutin M., Salmon A. and Ainouche M. 2021. Gene and Transposable Element Expression Evolution Following Recent and Past Polyploidy Events in Spartina (Poaceae). Frontiers Genetics. https://doi.org/10.3389/fgene.2021.589160

Mounger, J., M.L. Ainouche, O. Bossdorf, A. Cavé-Radet, B. Li, M. Parepa, A. Salmon, J. Yang & C.L. Richards. 2021. Epigenetics and the success of invasive species: Rapid adaptation in new environments. Philosophical Transactions of the Royal Society B. Special issue “How does epigenetics influence the course of evolution?” (Theme editors: Alyson Ashe, Vincent Colot, Ben Oldroyd) doi: 10.1098/rstb.2020.0117.

Giraud D., Lima O., Huteau V., Coriton O., Boutte J., Kovarik A, Leitch A.R., Leitch I.J., Ainouche M., Salmon A. 2021. Evolutionary dynamics of transposable elements and satellite DNAs in polyploid Spartina species. Plant Science 302 110671.

Cave-Radet, A.,· Lima O.·El Amrani A., Aïnouche M., Salmon A. 2019 Evolution of small RNA expression following hybridization and allopolyploidization: insights from Spartina species (Poaceae, Chloridoideae). Plant Molecular Biology https://doi.org/10.1007/s11103-019-00931-w

Alvarez M., J. Ferreira de Carvalho, A. Salmon, M. L. Ainouche, A. Cavé-Radet, A. El Amrani, T. E. Foster, S. Moyer, C. L. Richards. 2018. Transcriptome response of the foundation plant Spartina alterniflora to the Deepwater Horizon oil spill. Molecular Ecology 27 (14), pp.2986-3000

Rousseau H, Rousseau-Gueutin M, Dauvergne X, Boutte J, Simon G, Marnet N, Bouchereau A, Guiheneuf A, Bazureau J-P, Morice J, Ravanel S, Cabello-Hurtado F, Ainouche A, Salmon A, Wendel JF,.Ainouche M. 2017. Evolution of DMSP (dimethylsulfoniopropionate) biosynthesis pathway: Origin and phylogenetic distribution in polyploid Spartina (Poaceae, Chloridoideae) Molecular Phylogenetics and Evolution 114 (2017) 401–414

Ainouche, M and Gray, A. 2016 Invasive Spartina: lessons and challenges. Biological Invasions, 18 (8). 2119-2122.

Boutte J., Ferreira de Carvalho J., Rousseau-Gueutin M., Poulain J ., Da Silva C., Wincker P., Ainouche M., Salmon A. 2016. Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae). Genome Biology and Evolution 8,9, 3030-3044

Ainouche M. and Wendel J-F. 2014. Polyploid speciation and genome evolution: Lessons from recent allopolyploids. In: Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life. (P. Pontarrotti, Ed.). Springer, pp. 87-114.

Co-Edition of special issues representative of the candidate's research field:

• Biological Invasion (2016, 18, 8): Special issue on « Invasive Spartina »
  
• New Phytologist (2010, 186, 1): Special issue on "Polyploidy"
  

Scientific metrics (2021):

• 76 Publications including : 56 peer-reviewed international journals, 6 peer-reviewed book chapters , 6 peer-reviewed Proceedings & 8 non indexed articles.
  
• Invited talks: 37
  
• 17 International Meeting - Symposia organization